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| New here - Student of Biology | |
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Toughtopay Newcomer
Posts : 15 Reputation : 2 Join date : 2013-01-13 Age : 30 Location : France
| Subject: New here - Student of Biology Sun Jan 13, 2013 9:57 pm | |
| I saw your post on indiedb asking for biologists. I'm in the middle of my first year at university but I have a good 16 hours worth of lectures on organelles (which seem to be a major part already) so I think I can be of use to you guys right now.
Since I'm new and about a week late to the call I'd greatly appreciate it if someone directed me to the right place.
I don't know much about the project so far but I haven't yet seen the words parasitism, reproduction or virus. Just putting that out there. | |
| | | Daniferrito Experienced
Posts : 726 Reputation : 70 Join date : 2012-10-10 Age : 30 Location : Spain
| Subject: Re: New here - Student of Biology Mon Jan 14, 2013 4:50 am | |
| Welcome, Thoughtopay! As the first thing you ask for is a place to go to, i'll send you to the microbial compounds and organelles thread. You can igonre the last two pages between ido and me, as they just speak about the phisics side of propulsion. We still need to know how much force each propulsion organelle puts out. Other than that, we need a description of what does each organelle does. We alredy have some lists of organelles (at least 4), but they only have early descriptions. I'll quote myself on what we exactly need: - Spoiler:
- Daniferrito wrote:
- Well, we alredy have a list of organelles, on the page before this one, so we dont need to list them again. The only think to do is to define them exactly:
- What compounds does it intake
- What compounds does it produce
- What conditions affect that intake or production (moving increases intake of energy, more light means more production of glucose)
- What they cost to create/what can you get from recycling it/eating it from another cell
- Any other important fact, like positioning (inside the cell, at the border, or sticking out) or any pre-requisites
I'll copy the list of organelles here, so anyone reding this can find it easily:
- Spoiler:
- The Uteen wrote:
- I assume they will need a way to be gained, too, so I'll make a list based on our current proto-cells. I'm not quite sure what you mean by ‘significant details’, so I'll just write anything that comes to mind.
Based on our current proto-cells:
n) Proto-cell - Organelle - Processes - Significant details
1) Wrigglers - Flagellum - Propulsion, often sensory* - A tail-like means of propulsion.
2) Writhers - Cilia - Propulsion/sensory* - Hair-like, and similar to the flagellum in structure, cilia have many uses in multi-cellular creatures. They come in motile and non-motile varieties*.
3) Squirmers - Lamellipodium - Relatively rapid propulsion* - A cytoskeletal protein actin projection on the mobile edge of the cell*. Fun fact: I had never heard of such a thing before now.
4) Squishers - I don't think this technically counts as an organelle - Amoeba-like movement - Movement in a squirmy way.
5) Shiners - Bioluminescent dot - Bioluminescence - A dot which shines when the cell feeds. Probably best for top predators.
6) Clone-Stickers - Pilus - Cloning - Stabbed into another cell, to inject ‘reproductive material’ into another, causing them to die and be replaced by a clone of the former species. Have a very complicated page on Wikipedia.
7) Poison-stickers - Pilus - Poison - Stabbed into another cell, to inject a toxic material into another, causing them to die and dissolve into an edible material.
8 ) Defenders - Antiphagocytic capsule - Resistance to phagocytosis (absorbtion) - ‘Produces an outer coating of enzyme "slime"’
9) Producers - ? - +Nourishment - From proto-cells description: ‘Transform the amino acids into proteins. …grants the player double nourishment from absorbing Amino Acids, and allows damaged cell components to be replaced.’
10) Dissolvers - ? - +Nourishment - Again, from proto-cells description: ‘Reduce [proteins] to amino acids. …grants the player double nourishment from absorbing Protein, and allows cells with Walls to be consumed.’
11) Eaters - Mitochondria - (Cellular) Respiration (It's complicated) - Small dots. Allows the consumption of carbohydrates (glucose) for energy, but also take part in many other cell functions*. Have their own DNA*.
12) Light-eaters - Chloroplasts - Photosynthesis (6CO₂ + 6H₂O + Energy (Light) → C₆H₁₂O₆ + 6O₂) - Small green dots. Transform light into carbohydrates (glucose).
13) Heat-eaters - Thermoplasts? - Thermosynthesis - Don't ask me to explain how this works. If you want to know the equations, you can try asking in The m=c Thread. (I told you it would be a success! )
14) Cookers - Lysosomes - +Nourishment - ‘Release enzymes which break down proteins and cells into amino acids’. Do various other things*.
15) Holders - Vacuoles - Storage - From Wikipedia, since it already has a list of stuff, which is all fairly important: Isolating materials that might be harmful or a threat to the cell Containing waste products Containing water in plant cells Maintaining internal hydrostatic pressure or turgor within the cell Maintaining an acidic internal pH Containing small molecules Exporting unwanted substances from the cell Allows plants to support structures such as leaves and flowers due to the pressure of the central vacuole In seeds, stored proteins needed for germination are kept in 'protein bodies', which are modified vacuoles.
16) Platers - Cell walls - Defence - Form a protective barrier around the cell. ‘In silicone-rich environments, these may be 1.5x as hard to puncture/engulf (as they utilize silicate crystals)’. Rigidity varies*. I suppose I should also mention it is a layer on the exterior of the cell, just beyond the membrane.
17) Gluers - More to do with the DNA than organelles - Multicellularness - Allow a cell to bond with others of its type, or glue (sic) them together.
*According to the great book of knowledge, Wikipedia. Otherwise, either my knowledge or from the description of the proto-cell.
I may have missed some things, so reading the whole post is advised. | |
| | | ido66667 Regular
Posts : 366 Reputation : 5 Join date : 2011-05-14 Age : 110 Location : Space - Time
| Subject: Re: New here - Student of Biology Mon Jan 14, 2013 10:29 am | |
| Welcome...!
Have fun... and about compounds and organelles talked with Seregon, he is the main programmer, but he also did most of the work about these stuff. | |
| | | The Uteen Sandbox Team Lead
Posts : 1476 Reputation : 70 Join date : 2010-07-06 Age : 28 Location : England, Virgo Supercluster
| Subject: Re: New here - Student of Biology Mon Jan 14, 2013 10:52 am | |
| - Toughtopay wrote:
- I haven't yet seen the words parasitism, reproduction or virus. Just putting that out there.
The first is like symbiosis, which we have discussed. I think the main problems with these is that simulating them if difficult with our current auto-evo (automatic-evolution) concept ( this). Reproduction. Discussion of this topic consistently leads to backwards progress. ( Prepare yourself…) Viruses have been decided to be simply a semi-random chance of infection (higher under certain conditions) in multicellular. It is questionable whether they are even a form of life, so whether they exist as an organism or just semi-random chance (like multicellular) in cellular is fine either way, in my opinion. I'll try to refrain from making the obvious joke that would present itself if Thrive contained viruses… But it seems like I have already failed. Viruses have been discussed a lot, in various topics. Since the forum's built-in search doesn't seem to understand that threads consist of posts, with words in them which it could search through, here's a couple of Google searches of the forum: virus, disease Oh, and welcome! Any more questions can be posted either here, or in the misc. thread. | |
| | | Toughtopay Newcomer
Posts : 15 Reputation : 2 Join date : 2013-01-13 Age : 30 Location : France
| Subject: Re: New here - Student of Biology Mon Jan 14, 2013 1:01 pm | |
| Ah, that's a handy trick to know. Googling for the forum + the topic I want. Thanks for the various links, I notice that asexual reproduction isn't getting much love because it's basically cloning and doesn't lead to much diversity, but a lot of the time an organism with the option of asexual reproduction also has the option for sexual reproduction, which ultimately means it's a way to ensure the survival of the species and more often than not allows more diversity, even in the short-term. Following is a quick, questionable demonstration of this concept I just made. Warning! Math!- Spoiler:
If we take a population of 100 genetically distinct individuals with an equal gender ratio and a generation time (how long it takes to go from newborn to the time of reproduction) of one year, for three offspring/generation. If only sexual reproduction is used for ten years you have:U0=100 Un=(Un-1/2)*3 <=> Un=((Un-2/2)*3)/2*3) = 2.25*Un-2 U1=150 U2=225 ... U10~ 5,750 genetically distinct individuals.Now if you alternate between sexual and asexual for ten years you have:U0=100 If n%2=0 then Un=(Un-1/2)*3 U1=200 Else Un=2*Un-1 <=> Un=2*(Un-2)/2*3 <=> Un=3*Un-2 U2=300 - Spoiler:
U3=600 U4=900 U5=1800 U6=2700 U7=5400 U8=8100 U9=16200
U10~ 24,000 genetically distinct individuals.
Of course there's a ton more factors to take into account, but it could offer a definite advantage early-game and some variety. Or do you play the entire microbial stage as the same cell? This definitely wasn't the place for this but I got carried away and I don't want to just let this disappear by not posting. | |
| | | Daniferrito Experienced
Posts : 726 Reputation : 70 Join date : 2012-10-10 Age : 30 Location : Spain
| Subject: Re: New here - Student of Biology Mon Jan 14, 2013 1:46 pm | |
| Thats a good point about mixed reproduction. It actually benefits even more the asexual way, as being only sexual means that if you can't find a mate, you dont reproduce at all. However, as there is no way we can keep track of every specimen on the game, each with its own caracteristics, we would need to have a simplified way of keeping track of the population as a whole.
For the search, the best way is to use the search bar on the left, but choose the google search option.
Actually, don't bother seregon too much. He has recently been accepted on a prestigious college where he lives, and can't spend much time on here. For the programming side, you can just contact me. Or if it is questions on how feasible (whether it can be programmed) something is, just ask in the pertinent thread. | |
| | | ido66667 Regular
Posts : 366 Reputation : 5 Join date : 2011-05-14 Age : 110 Location : Space - Time
| Subject: Re: New here - Student of Biology Mon Jan 14, 2013 3:13 pm | |
| - Daniferrito wrote:
- Thats a good point about mixed reproduction. It actually benefits even more the asexual way, as being only sexual means that if you can't find a mate, you dont reproduce at all. However, as there is no way we can keep track of every specimen on the game, each with its own caracteristics, we would need to have a simplified way of keeping track of the population as a whole.
For the search, the best way is to use the search bar on the left, but choose the google search option.
Actually, don't bother seregon too much. He has recently been accepted on a prestigious college where he lives, and can't spend much time on here. For the programming side, you can just contact me. Or if it is questions on how feasible (whether it can be programmed) something is, just ask in the pertinent thread. So who could we bother about the more theoretical side? | |
| | | Daniferrito Experienced
Posts : 726 Reputation : 70 Join date : 2012-10-10 Age : 30 Location : Spain
| Subject: Re: New here - Student of Biology Mon Jan 14, 2013 3:33 pm | |
| What do you exactly mean by theoretical?
Anyway, when in doubt, as long as it isn't too deep into biology or chemistry, you can bother me, i'll gladly help you as much as i can. | |
| | | Toughtopay Newcomer
Posts : 15 Reputation : 2 Join date : 2013-01-13 Age : 30 Location : France
| Subject: Re: New here - Student of Biology Mon Jan 14, 2013 4:12 pm | |
| Ah, noted about Seregon. I've already sent him a pm a few hours ago but I will refrain from sending him any more. There are some pretty basic equations for population evolution which I have written down somewhere. I noticed there's a thread about the topic though, so I'll read that tomorrow and then if I still feel those could be useful I will post them there. | |
| | | Seregon Regular
Posts : 263 Reputation : 37 Join date : 2011-08-10 Location : UK
| Subject: Re: New here - Student of Biology Mon Jan 14, 2013 4:51 pm | |
| - Daniferrito wrote:
- Actually, don't bother seregon too much. He has recently been accepted on a prestigious college where he lives, and can't spend much time on here. For the programming side, you can just contact me. Or if it is questions on how feasible (whether it can be programmed) something is, just ask in the pertinent thread.
Actually, Scio's the one who just got accepted (one of the reason's he's also very busy), I'm 4-5 months away from finishing my PhD, so also very busy and stressed. I do still manage to read most threads here, but posting takes me a lot more time, so I'll only do that if it's on a topic I know best. Do feel free to pm me or ask me a question in a thread, I'll respond as soon as I can, but it may take a day or two. Any questions on the compound system, populaiton dynamics, or ecology I'll probably be the most help, though there are others here who know those subjects too. | |
| | | ido66667 Regular
Posts : 366 Reputation : 5 Join date : 2011-05-14 Age : 110 Location : Space - Time
| Subject: Re: New here - Student of Biology Mon Jan 14, 2013 5:00 pm | |
| - Seregon wrote:
- Daniferrito wrote:
- Actually, don't bother seregon too much. He has recently been accepted on a prestigious college where he lives, and can't spend much time on here. For the programming side, you can just contact me. Or if it is questions on how feasible (whether it can be programmed) something is, just ask in the pertinent thread.
Actually, Scio's the one who just got accepted (one of the reason's he's also very busy), I'm 4-5 months away from finishing my PhD, so also very busy and stressed. I do still manage to read most threads here, but posting takes me a lot more time, so I'll only do that if it's on a topic I know best. Do feel free to pm me or ask me a question in a thread, I'll prespond as soon as I can, but it may take a day or two. Any questions on the compound system, populaiton dynamics, or ecology I'll probably be the most help, though there are others here who know those subjects too. Oh... Ph.D? Dynamics analysis, right? Good luck with your theses! Also, you know best most of the current discussion's topics. P.S. By "theoretical" I referred to the compound system and such. Also, will be glad to bother you about practical programming. | |
| | | Daniferrito Experienced
Posts : 726 Reputation : 70 Join date : 2012-10-10 Age : 30 Location : Spain
| Subject: Re: New here - Student of Biology Mon Jan 14, 2013 5:21 pm | |
| - Seregon wrote:
- Daniferrito wrote:
- Actually, don't bother seregon too much. He has recently been accepted on a prestigious college where he lives, and can't spend much time on here. For the programming side, you can just contact me. Or if it is questions on how feasible (whether it can be programmed) something is, just ask in the pertinent thread.
Actually, Scio's the one who just got accepted (one of the reason's he's also very busy), I'm 4-5 months away from finishing my PhD, so also very busy and stressed. I do still manage to read most threads here, but posting takes me a lot more time, so I'll only do that if it's on a topic I know best. Do feel free to pm me or ask me a question in a thread, I'll respond as soon as I can, but it may take a day or two. Any questions on the compound system, populaiton dynamics, or ecology I'll probably be the most help, though there are others here who know those subjects too. Oh. Ok, then. I remember hearing that someone got accepted, and that you were busy, and i supossed it way you. My fault for being lazy and not searching back where i read it. @ido: Bother me as much as you want. I'm personally bored at my college. Last time they teached me how a while loop works three diferent times. | |
| | | NickTheNick Overall Team Co-Lead
Posts : 2312 Reputation : 175 Join date : 2012-07-22 Age : 28 Location : Canada
| Subject: Re: New here - Student of Biology Mon Jan 14, 2013 7:38 pm | |
| Welcome to the Thrive forums Toughtopay!
It's great to see another daunting soul join this epic project. It's amazing to see someone with your caliber of biology joining us. There are a lot of threads discussing the microbe stage, but the one Dani gave is a good one for current discussion. I'm glad to see our news update has brought in some talented artists and a biologist. | |
| | | Toughtopay Newcomer
Posts : 15 Reputation : 2 Join date : 2013-01-13 Age : 30 Location : France
| Subject: Re: New here - Student of Biology Tue Jan 15, 2013 8:30 pm | |
| Thank you all for the warm welcome, by the way. This is a really interesting project for me, just as much because I want to see the game made as because it pushes me to dig deeper in my studies. Plus I already feel that this is a great, friendly and motivated community, and it's just the kind of spirit that I value incredibly much.
Here's to ambition. | |
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